Detalhe da pesquisa
1.
Solvent constraints for biopolymer folding and evolution in extraterrestrial environments.
Proc Natl Acad Sci U S A
; 121(21): e2318905121, 2024 May 21.
Artigo
Inglês
| MEDLINE | ID: mdl-38739787
2.
Frustraevo: a web server to localize and quantify the conservation of local energetic frustration in protein families.
Nucleic Acids Res
; 2024 Apr 08.
Artigo
Inglês
| MEDLINE | ID: mdl-38587198
3.
Evolution and folding of repeat proteins.
Proc Natl Acad Sci U S A
; 119(31): e2204131119, 2022 08 02.
Artigo
Inglês
| MEDLINE | ID: mdl-35905321
4.
FrustratometeR: an R-package to compute local frustration in protein structures, point mutants and MD simulations.
Bioinformatics
; 37(18): 3038-3040, 2021 09 29.
Artigo
Inglês
| MEDLINE | ID: mdl-33720293
5.
Fuzziness and Frustration in the Energy Landscape of Protein Folding, Function, and Assembly.
Acc Chem Res
; 54(5): 1251-1259, 2021 03 02.
Artigo
Inglês
| MEDLINE | ID: mdl-33550810
6.
Local frustration around enzyme active sites.
Proc Natl Acad Sci U S A
; 116(10): 4037-4043, 2019 03 05.
Artigo
Inglês
| MEDLINE | ID: mdl-30765513
7.
Size and structure of the sequence space of repeat proteins.
PLoS Comput Biol
; 15(8): e1007282, 2019 08.
Artigo
Inglês
| MEDLINE | ID: mdl-31415557
8.
Inferring repeat-protein energetics from evolutionary information.
PLoS Comput Biol
; 13(6): e1005584, 2017 Jun.
Artigo
Inglês
| MEDLINE | ID: mdl-28617812
9.
Protein Frustratometer 2: a tool to localize energetic frustration in protein molecules, now with electrostatics.
Nucleic Acids Res
; 44(W1): W356-60, 2016 07 08.
Artigo
Inglês
| MEDLINE | ID: mdl-27131359
10.
Frustration in biomolecules.
Q Rev Biophys
; 47(4): 285-363, 2014 Nov.
Artigo
Inglês
| MEDLINE | ID: mdl-25225856
11.
Structural and Energetic Characterization of the Ankyrin Repeat Protein Family.
PLoS Comput Biol
; 11(12): e1004659, 2015 Dec.
Artigo
Inglês
| MEDLINE | ID: mdl-26691182
12.
Capturing coevolutionary signals inrepeat proteins.
BMC Bioinformatics
; 16: 207, 2015 Jul 02.
Artigo
Inglês
| MEDLINE | ID: mdl-26134293
13.
Amino Acid metabolism conflicts with protein diversity.
Mol Biol Evol
; 31(11): 2905-12, 2014 Nov.
Artigo
Inglês
| MEDLINE | ID: mdl-25086000
14.
Repeat proteins challenge the concept of structural domains.
Biochem Soc Trans
; 43(5): 844-9, 2015 Oct.
Artigo
Inglês
| MEDLINE | ID: mdl-26517892
15.
Protein frustratometer: a tool to localize energetic frustration in protein molecules.
Nucleic Acids Res
; 40(Web Server issue): W348-51, 2012 Jul.
Artigo
Inglês
| MEDLINE | ID: mdl-22645321
16.
On the role of frustration in the energy landscapes of allosteric proteins.
Proc Natl Acad Sci U S A
; 108(9): 3499-503, 2011 Mar 01.
Artigo
Inglês
| MEDLINE | ID: mdl-21273505
17.
Experimental snapshots of a protein-DNA binding landscape.
Proc Natl Acad Sci U S A
; 107(17): 7751-6, 2010 Apr 27.
Artigo
Inglês
| MEDLINE | ID: mdl-20375284
18.
Local energetic frustration conservation in protein families and superfamilies.
Nat Commun
; 14(1): 8379, 2023 Dec 16.
Artigo
Inglês
| MEDLINE | ID: mdl-38104123
19.
Coevolution-derived native and non-native contacts determine the emergence of a novel fold in a universally conserved family of transcription factors.
Protein Sci
; 31(6): e4337, 2022 06.
Artigo
Inglês
| MEDLINE | ID: mdl-35634768
20.
Molecular Information Theory Meets Protein Folding.
J Phys Chem B
; 126(43): 8655-8668, 2022 11 03.
Artigo
Inglês
| MEDLINE | ID: mdl-36282961